Introduction to SIPmg
The SIPmg R package was designed to enable the exploration and statistical analysis of qSIP metagenomics data. Particularly, this package allows the identification of isotope incorporators and quantifies isotopic enrichment.
Please check out introductory vignettes with some background information and a quick example pipeline, before checking out vignettes on:
Coverage normalization and scaling based on linear regression model
Identification of incorporators based on qSIP, ΔBD, or DESeq2 methods